FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004947723

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947723
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3319625
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGG85900.2587641676394171No Hit
GGACACCTGGCTCCTT83670.2520465414015137No Hit
TCGCGGTGAGTCTTGA72080.21713295929510107No Hit
GTTAAGAGAGTACGTT69100.20815604172157998No Hit
CGCTTACTGATCACAC57940.1745377866475882No Hit
ATCTTACTGGTTTGGT57110.17203750423617126No Hit
TACCAGTGATACGATC56580.1704409383590014No Hit
TTGTGGTGAAAGACAT55700.16779003652520993No Hit
ATAGATGGAGAGTAAT54380.1638136837745227No Hit
ATTCCTAACTGCGTGC54280.1635124449297737No Hit
ATATGCCGAGAACAGC51660.1556199871973491No Hit
TGGAACACTTGAGGCA47900.14429340663478554No Hit
CTTTCTGCTCTTGTGA45940.13838912527770456No Hit
GCTATACGACAGGTGA45220.13622020559551154No Hit
AGCTCTGCTGGCCTGT44390.1337199231840946No Hit
CTTGACGCTCAGGGTA43790.1319124901156004No Hit
ACTGGAACTCTGGAAG42560.12820725232518732No Hit
AGGTAGCGATTGACCA41430.12480325337952329No Hit
TGTGACTGACCGTTAA41280.12435139511239975No Hit
TGTACCCTGCTGAGAG38850.1170312911849983No Hit
AGTTCACGACCAGAGA38070.11468162819595587No Hit
ACCCTTTCTAGGTGAC37880.11410927439093271No Hit
TTCCAAACTCCGCTAG37070.11166923974846557No Hit
ACATGTGTGTCAATGC36860.11103663817449261No Hit
TCCCAGACTCCTAACA36770.11076552321421848No Hit
NNNNNNNNNNNNNNNN36320.10940994841284783No Hit
CACAGCTCTCTCTGGG34770.10474074631923788No Hit
ACACTCCACCGTACAT34670.10443950747448882No Hit
CAGTGGAGAGATCATC34550.10407802086078999No Hit
TCAGTCCACCCAGCAC34450.10377678201604096No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)