FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004947725

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947725
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1556720
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGTTTACAGTCTGT288261.8517138599105814No Hit
AAATAGGTGTTGCGTA123890.7958399712215427No Hit
GGCTTGCGACGACATT113840.731281155249499No Hit
TATCACTACTGGTCCG108340.6959504599414152No Hit
ATGGGTTACCATGCGC105290.6763579834523871No Hit
GTGTTGTGAGGGTAGT68650.440991315072717No Hit
CTAATCTTGCCACTTC67520.4337324631276016No Hit
CTGCTTTCTCCACTTC60650.38960121280641347No Hit
AGAGAATTGCCTCCTA57770.3711007759905442No Hit
GGGGGGGGGGGGGGGG48160.3093684156431471No Hit
CTGGCCAGAGGAATGC44650.28682100827380647No Hit
AGCCGAGCTGCCCTTT44520.285985919111979No Hit
AATGGTGCTTCGTACA40140.25784983812117784No Hit
TCCCTGTGACCCGCAA33100.21262654812683077No Hit
GAGAGAAGACTCACGG31060.19952207204892336No Hit
TGCCGTTACAATCTGC29990.1926486458708053No Hit
CTTAATCTGGGAATTA29320.18834472480600237No Hit
TCTTTCCACCGAGTGA27870.17903026877023484No Hit
TTGTCAACTAATACAG27530.17684618942391694No Hit
GCTGTTCTGATAGGTA27010.17350583277660725No Hit
GTAATCGTGATCCTCC26570.17067937715196052No Hit
GGGATGTGAAGGTGCA25960.16676088185415489No Hit
TAGCGCGACAAGACAT25660.1648337530191685No Hit
AGTCCTGCTCCTAGTA24300.1560974356338969No Hit
TCGTATACTTTCTGGA24280.15596896037823113No Hit
GCTCCTAACCTATCTT23690.15217894033609128No Hit
GCAAATCTGGAATTGA22090.14190091988283057No Hit
TTGCGTCACCACTCAA21620.13888175137468525No Hit
TGCAATGACACCTTGA21380.13734004830669613No Hit
GTTGTTGGATTCCATT21270.13663343440053444No Hit
CCTTTCTACTCGGGCT20170.12956729533891773No Hit
TTGTTTGTGGCGCTGT20050.1287964438049232No Hit
TACGCCTTGCTGATCA19740.12680507734210392No Hit
TGTCAATCTGGTGTCC19590.1258415129246107No Hit
CAAGTGGGATAGCGAG19090.12262963153296676No Hit
TACAACCGATCGCTAA19010.12211573051030371No Hit
GGTTGAACTTCTTTGT18850.12108792846497764No Hit
GAGGTGCCTTCGTACA18440.11845418572382958No Hit
TTCCACTCTCGAATCT18350.11787604707333367No Hit
CCTTTCTACTCATTTC17940.11524230433218562No Hit
AGAACGCGAGGAGTCA17930.11517806670435274No Hit
TAAGGGCGATTTCTTG17880.11485687856518834No Hit
CCCACCTCTCATGATC17700.11370060126419652No Hit
AATCCAGACTACCAAC17470.11222313582404028No Hit
CTGCCATTGTCTTTGT17250.11080990801171695No Hit
TCTTTCCACTTCGCAA16500.10599208592425098No Hit
CGGAATTTGAGAGGCT16310.10477157099542628No Hit
GTGGTAACTTTTCCGC16310.10477157099542628No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)