FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004947732

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947732
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3319625
Sequences flagged as poor quality0
Sequence length8
%GC75

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGCACCT319527896.25418533719923No Hit
GCGCCCCT370061.1147644688782619No Hit
GCGCACCA246900.743758707685356No Hit
GCGCACAT65650.19776330157773844No Hit
GCGCACCG64470.1942086832096999No Hit
CCGCACCT55680.16772978875626013No Hit
GCCCACCT52970.15956621606356142No Hit
GCGAACCT42480.12796626124938812No Hit
GCGCAACT38710.11660955680234965No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)