FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004947734

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947734
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5787451
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGGAAGA567420898.04330092816336No Hit
CAGGAAGC405990.7015005397021936No Hit
CAGGAATA133110.22999762762570258No Hit
CAGGAAAA88870.15355637568248956No Hit
AAGGAAGA69460.12001829475532494No Hit
CAGGAACA67420.11649342689899232No Hit
CACGAAGA65220.11269209881863364No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)