FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004947737

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947737
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3121817
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCGCGGTGAGTCTTGA88230.28262386936838385No Hit
GGGGGGGGGGGGGGGG78700.2520967756918487No Hit
GGACACCTGGCTCCTT64570.20683467352506568No Hit
GTTAAGAGAGTACGTT56870.18216955061747694No Hit
CGCTTACTGATCACAC55610.17813343959623512No Hit
TACCAGTGATACGATC52600.16849161882326863No Hit
TTGTGGTGAAAGACAT52090.16685795483848026No Hit
ATCTTACTGGTTTGGT51850.16608917178681518No Hit
ATTCCTAACTGCGTGC50040.1602912662721742No Hit
ATAGATGGAGAGTAAT49760.15939435271189822No Hit
ATATGCCGAGAACAGC46390.14859935736143406No Hit
TGGAACACTTGAGGCA43800.14030290692888148No Hit
CTTTCTGCTCTTGTGA42610.13649102429770868No Hit
CTTGACGCTCAGGGTA41890.13418467514271337No Hit
AGCTCTGCTGGCCTGT40790.13066108615591496No Hit
ACTGGAACTCTGGAAG38920.1246709848783577No Hit
TGTGACTGACCGTTAA37880.12133959165447558No Hit
GCGGTTCGAAGCAAGC36800.11788006792198262No Hit
ACCCTTTCTAGGTGAC35230.11285094545900672No Hit
AGTTCACGACCAGAGA35150.11259468444178501No Hit
TGTACCCTGCTGAGAG35100.11243452130602145No Hit
ACGCTCTTGCCTCAAA34990.11208216240734162No Hit
TTCCAAACTCCGCTAG34120.10929532384505562No Hit
AGGTAGCGATTGACCA33810.10830231240332154No Hit
ACATGTGTGTCAATGC32970.10561157172249366No Hit
ACACTCCACCGTACAT32880.10532327807811924No Hit
TCCCAGACTCCTAACA32770.10497091917943942No Hit
TCAGTCCACCCAGCAC32500.10410603824631617No Hit
AGCTTGCCTTTTCTTG31820.1019278195999317No Hit
CAGTGGAGAGATCATC31760.10173562383701543No Hit
CACAGCTCTCTCTGGG31710.10157546070125185No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)