FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004947740

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947740
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3121817
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AACGCGAA302647196.94581713149746No Hit
ACCGCGAA220930.707696831684881No Hit
AACGCCAA93810.3004980753195975No Hit
AACCCGAA76820.2460746417871387No Hit
AACGCAAA74610.23899543118638922No Hit
AACGAGAA58570.18761509723343808No Hit
AACGCGAT51560.1651602255993865No Hit
AAAGCGAA51290.16429534466626325No Hit
CACGCGAA38190.12233260309620966No Hit
AACGCGCA34720.11121728147421839No Hit
AACGCTAA31880.10212001536284798No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)