FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004947745

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947745
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences676418
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATGAATGACTCCTAC40360.5966724717556304No Hit
CTCCTAGTGAACGTAA36290.5365025768090145No Hit
CGACCAGACGCGCTGT34800.5144747774305237No Hit
TAGCTTTACCCTATCC31020.45859217229582894No Hit
CCAGGACTGTAACTCG24740.3657501722307804No Hit
ATCTGTACTGGGACTA22910.33869589514176146No Hit
GTTCTCGACCGTAGAG22720.33588698112705456No Hit
CTTCCTTTGGCTCAGC22000.3252426753871127No Hit
AGACCATTGAATCCAC20630.30498892696527885No Hit
GGGGGGGGGGGGGGGG20560.30395406390722896No Hit
CGATCAAACCCGGCTA20160.29804056071837237No Hit
TGCTGCTACTTTCTTG18170.2686208823538108No Hit
ACAGCCGACTTGCGTA17090.25265442374389796No Hit
GGCAACAGAATAGCAA17050.2520630734250124No Hit
AACTTACCTCACCTAA15540.2297395988870787No Hit
ATCGAAAGATTTCCGC14720.21761691734992267No Hit
CGCGTTGGAGCGGTTC14690.2171734046107584No Hit
GTAACTGTGTGAAAGT13710.2026853217980598No Hit
AGTGGAGTGAGTTGAA12820.18952777720285385No Hit
CCCTGAACTAGCTTTG12640.1868667007678684No Hit
CAATTCGGATAACGGG12540.18538832497065422No Hit
GGGTAGAACCAGTCTA12270.18139671031817603No Hit
AAGAACCCTTAACCCA11960.17681374534681216No Hit
GTGAAGCGATCCCAGG11190.16543025170826325No Hit
CGCGATCGATATCTGG10990.16247350011383493No Hit
TTCCTAAACTAATGCC10810.15981242367884946No Hit
TTTAGTCTGAGCAATA10680.1578905351424711No Hit
TGGAACACTCCTAGTA10620.1570035096641426No Hit
CACATCCTGAGCCTAT10330.15271621985222156No Hit
TGCAGATACTGCCACG10130.14975946825779327No Hit
GCAACTTGAAGGTGCA10020.14813325488085768No Hit
TGATAGAGAGACTGTT10020.14813325488085768No Hit
CTTTAACTGTCCGTAA9970.14739406698225063No Hit
AGTCCTGCTCGAACGA9950.1470983918228078No Hit
GAGTGTTACACCTGCG9760.1442894778081009No Hit
AGGTGTGGATCATGTG9760.1442894778081009No Hit
TGCAGTATGACACCGC9480.14015002557590128No Hit
ATTTCTGACGGGTAGT9470.14000218799617986No Hit
TCTCAGAGATGCATGT9380.13867164977868715No Hit
CTATTGGGACTTGTGA9380.13867164977868715No Hit
TCCGGGAACGTTCTCC9320.13778462430035865No Hit
CATAGGTACAAGGTGC9220.13630624850314452No Hit
AGAGTACCTTAATCGC9190.13586273576398025No Hit
TACGTTTACTGCACCG9180.13571489818425883No Hit
CTTAGATCTTGTCACA8990.13290598416955196No Hit
ATGTACGTGTACTTTC8900.13157544595205922No Hit
GGTCTAAACTCCTACC8890.1314276083723378No Hit
TGGCAATTGAGTGGTG8870.13113193321289499No Hit
TCTATGGGATGCTCAA8810.1302449077345665No Hit
TTCTTAGACGTCCCGA8460.12507059244431698No Hit
CGAGTCTCTGCTACGC8460.12507059244431698No Hit
CTACAACGAATCTGTG8300.12270519116877433No Hit
GGTCGCATGGTACTAC8160.12063546505267453No Hit
TCCATTTGAAATCTGC8100.11974843957434603No Hit
GGGATGTGACTGGAAG8050.11900925167573898No Hit
TGAGGGATGTACGTTG8020.11856573893657472No Hit
TGAACTGTGAACGTAA8020.11856573893657472No Hit
TTGCGGTCTTTTGGGT7990.11812222619741047No Hit
GCATGATACTTGCGTA7970.11782655103796764No Hit
GGGTGTGCTCGCAAAG7950.11753087587852482No Hit
TCAAAGCACTCTGCAA7920.11708736313936058No Hit
GTAATCTCTACACAAA7890.11664385040019633No Hit
TACTGTTTGCTTAAGC7790.11516547460298217No Hit
ACCAAGTTGAAGCTAA7780.11501763702326077No Hit
TCGGACCGATAGGCGA7780.11501763702326077No Hit
CATTCTATGCCTAGCG7700.11383493638548944No Hit
CACCAGGTGCGCCACA7680.11353926122604661No Hit
CTAGCTCACGAATAGT7660.11324358606660379No Hit
AGACTACTGGCCCTAG7640.11294791090716097No Hit
CGAGTCTCTTGGAACG7620.11265223574771814No Hit
CTCAATTTGGAATCTC7590.11220872300855389No Hit
GGCTGACTGAAACTGA7570.11191304784911105No Hit
ATGTCCAGACCGCTAG7540.11146953510994681No Hit
CTTTCGTCTCGAACGA7500.11087818479106114No Hit
ACCTCAGCTAATCCGT7340.10851278351551852No Hit
CACATTACTGATGGAC7280.10762575803719002No Hit
TCCGGGTGAACACCTA7240.10703440771830436No Hit
AGCCAATTGTTATGGC7220.10673873255886153No Hit
GCCATTCACCGGAAGT7190.10629521981969729No Hit
GTGTGATACCGTGCAC7140.10555603192109021No Hit
TGTAAGCACGCGCTGT7060.10437333128331888No Hit
CATAGTCGAAGATTCC7020.10378198096443324No Hit
CAATGTGTGACCGTTA6960.10289495548610475No Hit
TAGTACCGAACGAGCA6960.10289495548610475No Hit
TGCGCAGACATCAGGG6950.10274711790638333No Hit
GTCTAATCTAAGTTCC6950.10274711790638333No Hit
AGGCGATGACCTGCGA6940.1025992803266619No Hit
ATAGCCAACCGTTCTC6910.10215576758749766No Hit
TTGTGCGCTATGTGGG6910.10215576758749766No Hit
GTATTCACTGCTCCTT6890.10186009242805485No Hit
GGGCCTTGACTATCTT6890.10186009242805485No Hit
ACGAGGATGAACTAGA6870.10156441726861201No Hit
CTCCTAGTGACCATGT6850.10126874210916918No Hit
TGCTAGTGAAGGCGTA6840.10112090452944777No Hit
CTAACAGTGCATGATC6840.10112090452944777No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)