FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004947753

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947753
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3369301
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGTTTACAGTCTGT662851.9673220053655047No Hit
AAATAGGTGTTGCGTA270490.8028074665932192No Hit
GGCTTGCGACGACATT263880.7831891540708295No Hit
TATCACTACTGGTCCG240550.7139463051831819No Hit
ATGGGTTACCATGCGC230320.6835839243807543No Hit
GTGTTGTGAGGGTAGT156760.46525970817092327No Hit
CTAATCTTGCCACTTC148790.4416049501068619No Hit
CTGCTTTCTCCACTTC134890.40035010229124673No Hit
AGAGAATTGCCTCCTA125900.37366801007093164No Hit
CTGGCCAGAGGAATGC99780.296144511873531No Hit
AGCCGAGCTGCCCTTT99230.2945121258088844No Hit
AATGGTGCTTCGTACA89420.26539629436491424No Hit
GGGGGGGGGGGGGGGG88100.2614785678097623No Hit
TCCCTGTGACCCGCAA75830.2250615186948272No Hit
GAGAGAAGACTCACGG72700.21577175799965628No Hit
TGCCGTTACAATCTGC66480.19731095559583425No Hit
TTGTCAACTAATACAG63540.1885851100866322No Hit
GCTGTTCTGATAGGTA63390.18813991388718312No Hit
CTTAATCTGGGAATTA62580.18573585441015808No Hit
TCTTTCCACCGAGTGA61920.18377699113258208No Hit
TCGTATACTTTCTGGA61760.18330211518650308No Hit
GTAATCGTGATCCTCC60380.17920631015157149No Hit
GGGATGTGAAGGTGCA59400.17629769498183748No Hit
GCTCCTAACCTATCTT57410.17039142540247962No Hit
TAGCGCGACAAGACAT56680.1682248038984941No Hit
AGTCCTGCTCCTAGTA54810.1626746912786955No Hit
GCAAATCTGGAATTGA50990.1513370280660588No Hit
TGCAATGACACCTTGA47930.1422550255972975No Hit
GTTGTTGGATTCCATT47490.14094911674558017No Hit
TTGCGTCACCACTCAA47350.14053360029276102No Hit
TGTCAATCTGGTGTCC46290.1373875471499875No Hit
CCTTTCTACTCGGGCT44570.13228263072963797No Hit
TACGCCTTGCTGATCA44390.13174839529029908No Hit
GGTTGAACTTCTTTGT42930.127415152282328No Hit
TTGTTTGTGGCGCTGT42550.1262873219103903No Hit
TACAACCGATCGCTAA42510.12616860292387055No Hit
GAGGTGCCTTCGTACA41880.1242987788861844No Hit
CAAGTGGGATAGCGAG41210.12231023586197849No Hit
TAAGGGCGATTTCTTG40220.11937194094561454No Hit
CCCACCTCTCATGATC40160.1191938624658349No Hit
TTCCACTCTCGAATCT39710.11785827386748765No Hit
AATCCAGACTACCAAC39200.11634460678936076No Hit
TCTTTCCACTTCGCAA39000.11575101185676198No Hit
CTGCCATTGTCTTTGT38890.11542453464383265No Hit
AGAACGCGAGGAGTCA38530.11435606376515486No Hit
CCTTTCTACTCATTTC38440.11408894604548539No Hit
GTGGTAACTTTTCCGC37670.1118036055549801No Hit
GAGAGGTTGATGTGGG35710.10598637521551206No Hit
CGGAATTTGAGAGGCT34880.10352295624522713No Hit
CGTTTGCTGGCTAATC34300.10180153094069067No Hit
AGCACATTGCTGGAAG34110.10123761575472183No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)