FastQCFastQC Report
Mon 5 Sep 2022
EGAF00004947759

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947759
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14590733
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTACCTAC1434264998.29971530559843No Hit
TTACCTAA403580.2766002228949019No Hit
TTACATAC376370.25795139970006986No Hit
TTACCAAC358960.24601916846809546No Hit
ATACCTAC277260.19002472322672206No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)