FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004947761

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947761
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4341876
Sequences flagged as poor quality0
Sequence length8
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCAGTCC416096295.83327575453559No Hit
CCCAGTCC571601.3164816314422614No Hit
ACCAGTCA313420.7218538714601707No Hit
ACCAGACC113660.26177624602821453No Hit
ACAAGTCC106340.2449171740510323No Hit
ACCACTCC105330.24259099062248668No Hit
ACCCGTCC81000.1865553046655409TruSeq Adapter, Index 16 (100% over 8bp)
ACCAGTCG68270.1572361808582281No Hit
ACCAGTAC63980.1473556591666828No Hit
AACAGTCC50080.1153418476253122No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)