FastQCFastQC Report
Sat 10 Sep 2022
EGAF00004947767

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947767
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18034278
Sequences flagged as poor quality0
Sequence length8
%GC24

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTATTAG1764342997.83274384480488No Hit
TCAATTAG420660.23325580319877512No Hit
ACTATTAG393880.21840630381765214No Hit
TCTAATAG390390.21647110020151625No Hit
TCTATTAA378270.20975056500737096No Hit
TCTTTTAG333340.18483689782313437No Hit
TCTATAAG255050.14142512386689393No Hit
TCTATTAT239120.1325919451835No Hit
TCTATTTG230590.12786206356583835No Hit
TCTATTAC207320.1149588577929208No Hit
TATATTAG207180.11488122784843396No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)