FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004947776

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947776
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3012363
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCGCGGTGAGTCTTGA82800.27486727197220256No Hit
GGACACCTGGCTCCTT82650.27436932401573116No Hit
GGGGGGGGGGGGGGGG78990.2622193938778295No Hit
GTTAAGAGAGTACGTT55370.1838091889988026No Hit
CGCTTACTGATCACAC52700.174945715373612No Hit
TACCAGTGATACGATC49530.16442241522685017No Hit
ATCTTACTGGTTTGGT47920.15907777382739066No Hit
TTGTGGTGAAAGACAT47310.1570527854710737No Hit
ATAGATGGAGAGTAAT46770.15526017282777674No Hit
ATTCCTAACTGCGTGC46500.15436386650612824No Hit
ATATGCCGAGAACAGC43670.14496924839403486No Hit
TGGAACACTTGAGGCA41440.137566422107827No Hit
CTTTCTGCTCTTGTGA39480.1310599021432676No Hit
CTTGACGCTCAGGGTA38470.1277070525696936No Hit
AGGTAGCGATTGACCA38120.12654517400459375No Hit
AGCTCTGCTGGCCTGT37440.1242878099352568No Hit
TGTGACTGACCGTTAA34630.11495958488402626No Hit
ACGCTCTTGCCTCAAA34450.1143620473362606No Hit
GCTATACGACAGGTGA33490.11117518041484376No Hit
ACTGGAACTCTGGAAG33370.11077682204966666No Hit
AGTTCACGACCAGAGA32750.1087186371629183No Hit
TGTACCCTGCTGAGAG32380.10749036553695554No Hit
ACCCTTTCTAGGTGAC32200.10689282798918988No Hit
TTCCAAACTCCGCTAG32040.10636168350228709No Hit
GCGGTTCGAAGCAAGC31680.10516660840675575No Hit
CACAGCTCTCTCTGGG31100.10324120964173308No Hit
ACACTCCACCGTACAT30820.10231170678965318No Hit
TCAGTCCACCCAGCAC30520.10131581087671042No Hit
ACATGTGTGTCAATGC30480.10118302475498472No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)