FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004947778

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947778
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2477463
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGG75340.3041014134217141No Hit
GGACACCTGGCTCCTT75070.30301158887135754No Hit
TCGCGGTGAGTCTTGA67160.271083765933134No Hit
GTTAAGAGAGTACGTT47490.19168802924604728No Hit
CGCTTACTGATCACAC45150.18224288314295714No Hit
TACCAGTGATACGATC42110.16997226598338702No Hit
TTGTGGTGAAAGACAT39290.15858965401299635No Hit
ATCTTACTGGTTTGGT38520.1554816358508684No Hit
ATTCCTAACTGCGTGC37810.15261580092215304No Hit
ATAGATGGAGAGTAAT37630.15188925122191532No Hit
ATATGCCGAGAACAGC37400.15096088216050046No Hit
GCGGTTCGAAGCAAGC34640.13982045342352237No Hit
CTTGACGCTCAGGGTA34480.13917463146775552No Hit
TGGAACACTTGAGGCA34160.13788298755622183No Hit
GCTATACGACAGGTGA33790.136389524283511No Hit
AGGTAGCGATTGACCA31660.12779201949736485No Hit
AGCTCTGCTGGCCTGT31500.127146197541598No Hit
CTTTCTGCTCTTGTGA31250.1261371007357123No Hit
AGTTCACGACCAGAGA30410.12274653546793635No Hit
ACTGGAACTCTGGAAG29330.11838723726651014No Hit
TGTGACTGACCGTTAA28820.11632867978250332No Hit
ACGCTCTTGCCTCAAA28120.11350320872602336No Hit
ACCCTTTCTAGGTGAC27720.11188865383660623No Hit
ACACTCCACCGTACAT26310.10619734785141088No Hit
TGTACCCTGCTGAGAG26140.10551116202340861No Hit
TCAGTCCACCCAGCAC25980.10486534006764177No Hit
TTCCAAACTCCGCTAG25870.10442133747305207No Hit
ACATGTGTGTCAATGC25830.10425988198411035No Hit
CACAGCTCTCTCTGGG25730.10385624326175608No Hit
TCCCAGACTCCTAACA25390.10248387160575152No Hit
GGGAGCTCTTGATGAA25370.10240314386128067No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)