FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004947787

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947787
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3018001
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCGCGGTGAGTCTTGA81840.2711728723747938No Hit
GGACACCTGGCTCCTT79100.26209401521073056No Hit
GGGGGGGGGGGGGGGG74590.24715034885674325No Hit
GTTAAGAGAGTACGTT55020.18230610261560548No Hit
CGCTTACTGATCACAC52830.17504964378739438No Hit
ATCTTACTGGTTTGGT48330.1601391119486044No Hit
TACCAGTGATACGATC47690.15801850297597647No Hit
TTGTGGTGAAAGACAT47650.15788596491518725No Hit
ATAGATGGAGAGTAAT47620.15778656136959532No Hit
ATTCCTAACTGCGTGC45970.15231936636203897No Hit
ATATGCCGAGAACAGC42680.14141811086212364No Hit
TGGAACACTTGAGGCA39750.1317096979093115No Hit
CTTTCTGCTCTTGTGA39470.13078193148378678No Hit
AGCTCTGCTGGCCTGT38630.12799863220721264No Hit
CTTGACGCTCAGGGTA38500.1275678835096476No Hit
AGGTAGCGATTGACCA38200.12657384805372826No Hit
ACGCTCTTGCCTCAAA34750.11514244031065597No Hit
TGTGACTGACCGTTAA34070.1128892932772388No Hit
ACTGGAACTCTGGAAG33220.11007285948546736No Hit
ACCCTTTCTAGGTGAC33090.10964211078790231No Hit
TGTACCCTGCTGAGAG32710.10838299921040451No Hit
AGTTCACGACCAGAGA31670.10493700962988416No Hit
TTCCAAACTCCGCTAG31490.10434058835633254No Hit
GCTATACGACAGGTGA31430.10414178126514868No Hit
ACACTCCACCGTACAT30890.10235251744449389No Hit
ACATGTGTGTCAATGC30750.10188863423173154No Hit
GCGGTTCGAAGCAAGC30600.10139161650377186No Hit
CACAGCTCTCTCTGGG30540.10119280941258801No Hit
TCAGTCCACCCAGCAC30260.10026504298706329No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)