FastQCFastQC Report
Mon 5 Sep 2022
EGAF00004947792

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947792
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16029628
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTAAGCCT1580115798.5746955575014No Hit
TTAAGCCA515930.32186024529078283No Hit
TAAAGCCT227500.1419246909535268No Hit
ATAAGCCT217970.13597945005336368No Hit
TTAAGCAT199900.12470657460048355No Hit
TTACGCCT170190.10617214572914606No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)