FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004947795

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947795
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3905155
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCTAGTGAACGTAA206560.5289418729858354No Hit
CGACCAGACGCGCTGT189340.484846312118213No Hit
GATGAATGACTCCTAC185140.4740912972724515No Hit
TAGCTTTACCCTATCC180160.46133892252676273No Hit
CCAGGACTGTAACTCG135070.345876156004051No Hit
ATCTGTACTGGGACTA125310.3208835500767575No Hit
GTTCTCGACCGTAGAG122310.3132013966154993No Hit
CTTCCTTTGGCTCAGC121690.31161375156683924No Hit
CGATCAAACCCGGCTA114260.2925876181611229No Hit
AGACCATTGAATCCAC108140.27691602510015606No Hit
TGCTGCTACTTTCTTG101530.2599896803071837No Hit
GGGGGGGGGGGGGGGG99980.2560205676855336No Hit
GGCAACAGAATAGCAA93410.239196651605378No Hit
ACAGCCGACTTGCGTA93390.23914543724896964No Hit
AACTTACCTCACCTAA85130.21799390805230523No Hit
CGCGTTGGAGCGGTTC80390.20585610558351716No Hit
ATCGAAAGATTTCCGC80080.20506228305918717No Hit
GTAACTGTGTGAAAGT76550.19602294915310658No Hit
CCCTGAACTAGCTTTG73870.18916022539438254No Hit
AGTGGAGTGAGTTGAA73430.188033509553398No Hit
CAATTCGGATAACGGG71650.18347543183305143No Hit
GGGTAGAACCAGTCTA65420.16752215981183846No Hit
TTCCTAAACTAATGCC64690.16565283580293227No Hit
TTTAGTCTGAGCAATA63970.1638091189722303No Hit
AAGAACCCTTAACCCA63530.16268240313124574No Hit
GTGAAGCGATCCCAGG61800.15825236130192016No Hit
CGCGATCGATATCTGG61490.15745853877759014No Hit
TGGAACACTCCTAGTA59210.15162010214703386No Hit
TGCAGATACTGCCACG58710.15033974323682414No Hit
TGATAGAGAGACTGTT56510.14470616403190142No Hit
AGTCCTGCTCGAACGA56230.14398916304218398No Hit
CTTTAACTGTCCGTAA55910.14316973333964977No Hit
CACATCCTGAGCCTAT55710.1426575897755659No Hit
AGGTGTGGATCATGTG55610.14240151799352396No Hit
GCAACTTGAAGGTGCA54300.1390469776487745No Hit
TGCAGTATGACACCGC53260.1363838311155383No Hit
TCTCAGAGATGCATGT52650.13482179324508245No Hit
TCCGGGAACGTTCTCC51770.13256836156311338No Hit
TGGCAATTGAGTGGTG51740.1324915400285008No Hit
CTTAGATCTTGTCACA51580.13208182517723369No Hit
TCAAAGCACTCTGCAA51490.13185136057339594No Hit
CATAGGTACAAGGTGC51320.1314160385439246No Hit
ATTTCTGACGGGTAGT50890.1303149298811443No Hit
CTATTGGGACTTGTGA49870.12770299770431648No Hit
ATGTACGTGTACTTTC49860.12767739052611227No Hit
TACGTTTACTGCACCG49770.12744692592227452No Hit
TGAACTGTGAACGTAA48560.12434845735956702No Hit
AGAGTACCTTAATCGC48550.12432285018136285No Hit
TCTATGGGATGCTCAA48450.12406677839932088No Hit
TTCTTAGACGTCCCGA47610.12191577543016859No Hit
CGAGTCTCTGCTACGC47350.12124998879685953No Hit
TCCATTTGAAATCTGC46660.11948309350077013No Hit
TACTGTTTGCTTAAGC46200.11830516330337719No Hit
GGTCTAAACTCCTACC46060.11794666280851848No Hit
GGGTGTGCTCGCAAAG45560.11666630389830876No Hit
CTACAACGAATCTGTG45510.1165382680072878No Hit
GGTCGCATGGTACTAC45440.11635901775985845No Hit
CATTCTATGCCTAGCG44250.11331176355355935No Hit
GAGTGTTACACCTGCG44220.11323494201894675No Hit
GCATGATACTTGCGTA44080.11287644152408803No Hit
TTGCGGTCTTTTGGGT44000.11267158409845447No Hit
CTCAATTTGGAATCTC43980.11262036974204609No Hit
CTAGCTCACGAATAGT43950.11254354820743351No Hit
CTTTCGTCTCGAACGA43610.11167290414849092No Hit
CACCAGGTGCGCCACA43450.1112631892972238No Hit
GTAATCTCTACACAAA42540.10893293608064211No Hit
GGGATGTGACTGGAAG42210.10808789919990372No Hit
TCGGACCGATAGGCGA42130.10788304177427016No Hit
AGACTACTGGCCCTAG41740.1068843618243066No Hit
CACATTACTGATGGAC41690.10675632593328563No Hit
AGCCAATTGTTATGGC41680.10673071875508143No Hit
TGCTAGTGAAGGCGTA41620.10657707568585625No Hit
CGAGTCTCTTGGAACG41540.1063722182602227No Hit
ACCAAGTTGAAGCTAA41040.105091859350013No Hit
ACCTCAGCTAATCCGT40630.10404196504364104No Hit
ATGTCCAGACCGCTAG40600.10396514350902845No Hit
TGTAAGCACGCGCTGT40510.10373467890519071No Hit
CATAGTCGAAGATTCC40430.10352982147955715No Hit
TAGTACCGAACGAGCA40340.1032993568757194No Hit
AGCTTGTGATTGCGTA40140.10278721331163551No Hit
TCCGGGTGAACACCTA39670.10158367593603838No Hit
TGCGCAGACATCAGGG39640.10150685440142582No Hit
TCATCATTGGACTCGC39570.10132760415399644No Hit
CTAACAGTGCATGATC39380.10084106776811677No Hit
AGGCGATGACCTGCGA39130.10020088831301191No Hit
ATAGCCAACCGTTCTC39120.10017528113480771No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)