FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004947798

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947798
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3905155
Sequences flagged as poor quality0
Sequence length8
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGACTAC380056397.32169401726692No Hit
GGGCCTAC237040.6069925521522193No Hit
GGGACTAA104320.26713408302615393No Hit
GGGACAAC85810.21973519617019044No Hit
GGGACTCC63200.16183736625050735No Hit
GCGACTAC58840.15067263655347868No Hit
GGGAATAC55360.1417613385384191No Hit
CGGACTAC54170.13871408433211999No Hit
GGCACTAC51830.13272200463233852No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)