FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004947799

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947799
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16471047
Sequences flagged as poor quality0
Sequence length34
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTGTATA35300.09.6113511
TAGACCG5350.08.8968355
TAGACTG20550.08.3792225
CTAGGAC22650.08.3451473
GTCTAAG16200.08.1349831
TAGACAG30250.08.0525665
TATACGG2809.187643E-77.99967585
TACACCG6400.07.8746815
CTTAGAC15400.07.8189093
TAGTACT13100.07.69483474
TAGGACC15700.07.66896774
TATACTG17950.07.6431445
ATAGTAC13450.07.59922033
GTCTTAG19400.07.5880711
TACACTG27500.07.5851475
GTATACG3352.1578671E-77.53306151
TAGGACT21400.07.4581174
TAGGCCG10700.07.45764165
TGGACCG10000.07.4196995
TCTACAC19850.07.33569533
Produced by FastQC (version 0.11.5)