FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004947804

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947804
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2445697
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATCAGTG236766296.80929403765062No Hit
CATCAGTA99240.4057738959486805No Hit
CAACAGTG63320.25890369902731203No Hit
CATAAGTG61410.25109406439145976No Hit
CAGCAGTG59450.2430799890583339No Hit
CATCACTG57510.23514769000411742No Hit
CCTCAGTG48760.19937056798123398No Hit
CTTCAGTG45280.18514149545099004No Hit
CATCAGGG42660.17442880291385238No Hit
CATCAGAG42020.17181196198875004No Hit
CATCAGTC39400.16109926945161235No Hit
AATCAGTG38740.15840065224760058No Hit
CATCAGTT30000.12266441836417184No Hit
CATCATTG26570.10863978653120154No Hit
CATGAGTG24570.10046215864025673No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)