FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004947808

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947808
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2366352
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AACGCGAA233229198.56061143904203No Hit
AACGCAAA55360.233946597970209No Hit
ACCGCGAA39920.16869848610857555No Hit
AACGCCAA27460.11604359790935584No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)