FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004947811

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947811
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3100583
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGTTATG303625597.92529340449845No Hit
CCGTTATA118250.38137988887896246No Hit
CCGGTATG71920.23195637723615203No Hit
ACGTTATG57630.18586827058008124No Hit
CCGATATG45000.14513399576789268No Hit
CCGTTAAG38030.12265435242339909No Hit
CCGTTATC37960.12242858842998236No Hit
CCGTTTTG35420.1142365806688613No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)