FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004947815

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947815
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4649250
Sequences flagged as poor quality0
Sequence length8
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGCTACC452103997.24232940796902No Hit
AGGCTACA241200.5187933537667366No Hit
AGGCTCCC154320.33192450395225037No Hit
AGGCAACC152560.3281389471420122No Hit
ACGCTACC80580.17331827714147444No Hit
AGTCTACC76570.16469323009087486No Hit
CGGCTACC71330.15342259504221112No Hit
AGGATACC65930.14180781846534388No Hit
AGCCTACC57160.12294456095069098No Hit
AGGCTAAC53150.11431951390009142No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)