FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004947818

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947818
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3059693
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AACGCGAA296841097.01659610947895No Hit
ACCGCGAA214280.7003316999450598No Hit
AACGCCAA96380.3149989230945719No Hit
AACCCGAA73890.2414948166368325No Hit
AACGCAAA73630.2406450581806737No Hit
AACGAGAA57110.186652713197043No Hit
AAAGCGAA44920.14681211481021134No Hit
AACGCGAT44420.14517796393298282No Hit
CACGCGAA34380.11236421431823389No Hit
AACGCTAA31810.10396467880927923No Hit
AACTCGAA30900.1009905242127233No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)