FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004947821

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947821
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3059693
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCGCGGTGAGTCTTGA85010.2778383321463951No Hit
GGGGGGGGGGGGGGGG74730.24424019011057646No Hit
GGACACCTGGCTCCTT70750.23123234912783733No Hit
GTTAAGAGAGTACGTT57430.18769856975846924No Hit
ATCTTACTGGTTTGGT52100.17027852140721308No Hit
CGCTTACTGATCACAC51700.16897120070543026No Hit
TTGTGGTGAAAGACAT51020.16674875551239945No Hit
TACCAGTGATACGATC50300.16439557824919038No Hit
ATAGATGGAGAGTAAT48140.15733604645956312No Hit
ATTCCTAACTGCGTGC47270.15449262393318544No Hit
ATATGCCGAGAACAGC45620.1490999260383313No Hit
TGGAACACTTGAGGCA43830.14324966589785315No Hit
CTTTCTGCTCTTGTGA41000.13400037193273967No Hit
CTTGACGCTCAGGGTA40070.13096085130109458No Hit
AGCTCTGCTGGCCTGT39780.13001304379230202No Hit
GCGGTTCGAAGCAAGC37830.12363985537111076No Hit
ACTGGAACTCTGGAAG37680.1231496101079422No Hit
TGTGACTGACCGTTAA35650.11651495754639435No Hit
TGTACCCTGCTGAGAG35480.11595934624813665No Hit
AGGTAGCGATTGACCA35250.11520763684461154No Hit
ACGCTCTTGCCTCAAA33990.11108957663399563No Hit
ACCCTTTCTAGGTGAC33770.11037055024801508No Hit
AGTTCACGACCAGAGA33560.10968420687957908No Hit
TTCCAAACTCCGCTAG32830.10729834659882542No Hit
TCCCAGACTCCTAACA31890.10422614294963581No Hit
ACATGTGTGTCAATGC31760.10380126372155637No Hit
TCAGTCCACCCAGCAC31590.10324565242329868No Hit
ACACTCCACCGTACAT31530.10304955431803126No Hit
GCTATACGACAGGTGA31390.10259199207240727No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)