FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004947835

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947835
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3717379
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATGAATGACTCCTAC213550.5744638897459743No Hit
CTCCTAGTGAACGTAA191630.5154976126997005No Hit
CGACCAGACGCGCTGT184390.49602152484317585No Hit
TAGCTTTACCCTATCC169910.4570693491301263No Hit
CCAGGACTGTAACTCG126740.3409391401845225No Hit
ATCTGTACTGGGACTA119460.32135544963265783No Hit
GTTCTCGACCGTAGAG119370.32111334356814303No Hit
CTTCCTTTGGCTCAGC116690.31390396298036866No Hit
CGATCAAACCCGGCTA109150.29362085490879464No Hit
AGACCATTGAATCCAC104640.2814886510092191No Hit
TGCTGCTACTTTCTTG95120.2558792095183192No Hit
ACAGCCGACTTGCGTA90660.24388150898791866No Hit
GGCAACAGAATAGCAA90630.2438008069664137No Hit
GGGGGGGGGGGGGGGG87950.23659142637863936No Hit
AACTTACCTCACCTAA82200.22112353892352649No Hit
CGCGTTGGAGCGGTTC76890.20683928111715272No Hit
ATCGAAAGATTTCCGC74260.19976440389855324No Hit
NNNNNNNNNNNNNNNN74000.19906498637884382No Hit
GTAACTGTGTGAAAGT72590.1952719913681118No Hit
CCCTGAACTAGCTTTG69930.1881164121280074No Hit
AGTGGAGTGAGTTGAA69900.18803571010650247No Hit
CAATTCGGATAACGGG65960.17743684461552078No Hit
GGGTAGAACCAGTCTA63520.17087308019978592No Hit
TTCCTAAACTAATGCC62130.16713388653672387No Hit
AAGAACCCTTAACCCA62100.16705318451521892No Hit
GTGAAGCGATCCCAGG58820.15822976349734585No Hit
CGCGATCGATATCTGG58740.158014558106666No Hit
TGGAACACTCCTAGTA57790.155458994092343No Hit
TTTAGTCTGAGCAATA56470.1519081051461258No Hit
TGCAGATACTGCCACG55780.15005195865151225No Hit
TGATAGAGAGACTGTT54670.14706598385582959No Hit
AGTCCTGCTCGAACGA54240.14590925488092552No Hit
TCCGGGAACGTTCTCC53950.1451291353397111No Hit
CTTTAACTGTCCGTAA53890.14496773129670124No Hit
CACATCCTGAGCCTAT53650.14432211512466175No Hit
GCAACTTGAAGGTGCA52690.14173965043650377No Hit
TCTCAGAGATGCATGT51700.13907648372684087No Hit
TGCAGTATGACACCGC51620.13886127833616105No Hit
CATAGGTACAAGGTGC50930.1370051318415475No Hit
AGGTGTGGATCATGTG50650.13625191297416808No Hit
CTTAGATCTTGTCACA50050.13463787254406934No Hit
TCAAAGCACTCTGCAA49470.1330776334616406No Hit
CTATTGGGACTTGTGA49120.1321361098774163No Hit
ATTTCTGACGGGTAGT48920.13159809640071676No Hit
GAGTGTTACACCTGCG48870.13146359303154184No Hit
TACGTTTACTGCACCG48850.13140979168387187No Hit
CGAGTCTCTGCTACGC48540.13057587079498753No Hit
ATGTACGTGTACTTTC47580.12799340610682958No Hit
TCTATGGGATGCTCAA47150.12683667713192548No Hit
TGAACTGTGAACGTAA46610.12538404074483664No Hit
TGGCAATTGAGTGGTG46420.12487292794197202No Hit
GGTCTAAACTCCTACC46390.12479222592046708No Hit
TTCTTAGACGTCCCGA46380.12476532524663211No Hit
AGAGTACCTTAATCGC46050.1238776030100778No Hit
GCATGATACTTGCGTA45210.12161794640793958No Hit
GGTCGCATGGTACTAC45070.12124133697424987No Hit
TACTGTTTGCTTAAGC44680.12019221069468569No Hit
TCCATTTGAAATCTGC44680.12019221069468569No Hit
CTACAACGAATCTGTG43180.11615710961943886No Hit
GGGTGTGCTCGCAAAG43140.11604950692409893No Hit
GTAATCTCTACACAAA43070.11586120220725409No Hit
CTAGCTCACGAATAGT42470.11424716177715535No Hit
GGGATGTGACTGGAAG42100.11325183684526115No Hit
CATTCTATGCCTAGCG42090.11322493617142615No Hit
CACCAGGTGCGCCACA41960.11287522741157142No Hit
TTGCGGTCTTTTGGGT41670.11209510787035704No Hit
CTCAATTTGGAATCTC41600.11190680315351219No Hit
TGAGGGATGTACGTTG40920.11007755733273364No Hit
CTTTCGTCTCGAACGA40660.10937813981302417No Hit
CGAGTCTCTTGGAACG40630.10929743779151925No Hit
AGCCAATTGTTATGGC40470.10886702701015957No Hit
AGACTACTGGCCCTAG40350.10854421892413982No Hit
TCGGACCGATAGGCGA40330.10849041757646988No Hit
TGTAAGCACGCGCTGT39920.10738748994923573No Hit
ATGTCCAGACCGCTAG39530.10633836366967156No Hit
CACATTACTGATGGAC39280.1056658468237971No Hit
TGCGCAGACATCAGGG39250.10558514480229216No Hit
ACCAAGTTGAAGCTAA39220.10550444278078722No Hit
TCCGGGTGAACACCTA39190.10542374075928228No Hit
ATAGCCAACCGTTCTC38750.1042401111105432No Hit
ACCTCAGCTAATCCGT38710.10413250841520329No Hit
CATAGTCGAAGATTCC38650.10397110437219342No Hit
GGCTGACTGAAACTGA38610.10386350167685351No Hit
TAGTACCGAACGAGCA38560.10372899830767861No Hit
TGCTAGTGAAGGCGTA38540.10367519696000864No Hit
AGGCGATGACCTGCGA38140.1025991700066095No Hit
CTAACAGTGCATGATC37860.10184595113923009No Hit
GCCATTCACCGGAAGT37330.1004202154259762No Hit
GTGTGATACCGTGCAC37320.10039331475214122No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)