FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004947842

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947842
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3667362
Sequences flagged as poor quality0
Sequence length8
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGACTAC358430097.73510223424903No Hit
GGGCCTAC168530.45954012720860393No Hit
GGGACTAA100670.2745024898005705No Hit
GGGACAAC71000.1935996501027169No Hit
GGGACTCC47710.13009351135775526No Hit
GGGAATAC46620.12712134771533323No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)