FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004947852

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947852
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2588860
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCGCGGTGAGTCTTGA70900.2738657169564982No Hit
GGACACCTGGCTCCTT69180.2672218659950712No Hit
GGGGGGGGGGGGGGGG60180.23245752956899948No Hit
NNNNNNNNNNNNNNNN52460.20263745432352465No Hit
GTTAAGAGAGTACGTT49920.19282618604327775No Hit
CGCTTACTGATCACAC46190.17841829994669467No Hit
TACCAGTGATACGATC43210.1669074418856176No Hit
TTGTGGTGAAAGACAT41970.16211768886691438No Hit
ATCTTACTGGTTTGGT41660.16092025061223858No Hit
ATAGATGGAGAGTAAT40020.15458541597459885No Hit
ATTCCTAACTGCGTGC39830.153851502205604No Hit
ATATGCCGAGAACAGC37430.14458101249198488No Hit
TGGAACACTTGAGGCA36520.1410659518089043No Hit
CTTGACGCTCAGGGTA35030.13531052277836578No Hit
CTTTCTGCTCTTGTGA34500.13326328963327488No Hit
GCGGTTCGAAGCAAGC34450.1330701544309078No Hit
AGCTCTGCTGGCCTGT32520.1256151356195391No Hit
AGGTAGCGATTGACCA31700.12244771830071924No Hit
TGTGACTGACCGTTAA31670.122331837179299No Hit
GCTATACGACAGGTGA31570.12194556677456486No Hit
ACTGGAACTCTGGAAG31190.12047773923657516No Hit
AGTTCACGACCAGAGA29670.1146064290846164No Hit
TGTACCCTGCTGAGAG29660.11456780204414298No Hit
ACCCTTTCTAGGTGAC29000.11201841737289772No Hit
TTCCAAACTCCGCTAG28970.11190253625147747No Hit
ACGCTCTTGCCTCAAA28910.111670774008637No Hit
ACACTCCACCGTACAT28040.10831022148745006No Hit
TCAGTCCACCCAGCAC27800.10738317251608816No Hit
ACATGTGTGTCAATGC27100.10467927968294925No Hit
TCCCAGACTCCTAACA26710.10317282510448615No Hit
CACAGCTCTCTCTGGG26320.10166637052602304No Hit
CAGTGGAGAGATCATC26240.10135735420223574No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)