FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004947854

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947854
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13608148
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTAGGTT1336282098.19719773770832No Hit
CGTAGGTA631910.4643614987138588No Hit
CGTAGGGT272070.19993168798575675No Hit
CGAAGGTT211480.15540689298793633No Hit
CGTAGGAT194850.1431862734003187No Hit
CGGAGGTT144560.10623047309597161No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)