FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004947858

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947858
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences915307
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGCCGATGGTTAGAA38150.41680004632325546No Hit
GTCGACCGATGCTCAA32850.358895976978216No Hit
CATTCAACTAGGCATG32150.3512482697062297No Hit
GGGGGGGGGGGGGGGG30910.33770090253871105No Hit
ACTGGGCACTTCTCGC27340.29869759545158076No Hit
TGTAAGCTGTTGTGAC26160.2858057460502323No Hit
GCTTTAGGAACTAGTC20320.22200201680966059No Hit
TAGTTGCGACATAGCT15370.16792180110061433No Hit
CATCAGTGATTCGCAA14640.15994633494554286No Hit
CAGGAGCCTCGTGCAC13520.14771000331036474No Hit
CAGGAGCCTTCCAATG10780.11777469198858961No Hit
TCCTTAAACAGGGAGG9650.10542910739238309No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)