FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004947859

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947859
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4394504
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGTACT432359698.38643906115458No Hit
ATCGTACA168830.3841844267293874No Hit
ATAGTACT84930.19326413174274049No Hit
ATCGAACT83240.1894184190070142No Hit
AACGTACT62100.14131287626544428No Hit
ATCGTAAT47210.10742964393706321No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)