FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004947861

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947861
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6543051
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTATCCC641399298.02754097438641No Hit
TTTATCCA496990.7595691979169962No Hit
TATATCCC110680.16915656014296696No Hit
ATTATCCC98610.15070950845408357No Hit
TTAATCCC88350.13502875034903442No Hit
TTTAACCC83730.12796782418477254No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)