FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004947862

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947862
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14438578
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTAATGT1419798198.33365169340084No Hit
GGTAATGA592120.41009578644101935No Hit
GGTAAAGT240090.16628368804739635No Hit
GGAAATGT199010.13783213277651027No Hit
GGTAATTT145500.10077169649254933No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)