FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004947867

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947867
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14093341
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTAATGT1382780698.11588323875795No Hit
GGTAATGA590640.4190915411753679No Hit
GGTTATGT235890.1673769193550344No Hit
GGTAAAGT234970.16672412879245596No Hit
GGAAATGT192280.13643322757889703No Hit
GGTATTGT162640.11540201858452159No Hit
GGTAATTT142610.1011896327492537No Hit
GGTAATCT141640.10050136443870902No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)