FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004947869

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947869
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4583529
Sequences flagged as poor quality0
Sequence length8
%GC75

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTCGAGC442607196.56469938337905No Hit
GGTCGCGC618711.3498551007313362No Hit
GGTCGAGA111460.2431750731805122No Hit
GGTCGACC99090.21618713441106185No Hit
GGACGAGC93730.20449308818598072No Hit
GGTAGAGC86590.18891557138615245No Hit
GGTCCAGC86300.18828287112397457No Hit
CGTCGAGC66940.14604467431099485No Hit
GCTCGAGC58880.12845997047253327No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)