FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004947873

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947873
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4017718
Sequences flagged as poor quality0
Sequence length8
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCCGGCA395115598.34326351426357No Hit
AACCGGCA108590.27027780446512173No Hit
ATCCGCCA80540.2004620533347537No Hit
ATCCGGAA77540.1929951280801689No Hit
ATACGGCA77200.19214887655131593No Hit
ATCCCGCA44930.11182965056283194No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)