FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004947878

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947878
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14487500
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACGTTACA1424980698.35931665228645No Hit
ACGTTAAA331300.22867989646246767No Hit
ACGATACA283860.19593442622950819No Hit
ACATTACA243830.1683037100949094No Hit
ACCTTACA185900.12831751509922346No Hit
ACGTAACA184510.12735806729939603No Hit
ACGGTACA162300.11202761000862813No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)