FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004947892

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947892
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6198292
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCACGTTT604310997.49635867429285No Hit
GCACGTTA625651.0093909741586875No Hit
GCCCGTTT121980.19679614964896783No Hit
GCACGTAT116570.18806793871602048No Hit
GCACGGTT106720.17217646409688347No Hit
GCACGATT98820.15943101744803245No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)