FastQCFastQC Report
Fri 9 Sep 2022
EGAF00004947895

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947895
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17401297
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGTTATG1704642297.96064052007158No Hit
CCGTTATA647730.37223087451469855No Hit
CCGGTATG427730.24580351682980872No Hit
CCGATATG304250.17484328898012602No Hit
CCGTTTTG260690.14981067215851784No Hit
CCGTAATG258490.14854639858166893No Hit
CCGTTAAG210510.12097374121020979No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)