FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004947903

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947903
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3696765
Sequences flagged as poor quality0
Sequence length8
%GC24

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTAGATTG361686097.83851556698897No Hit
TTAGATTA109960.2974492563092325No Hit
ATAGATTG81670.22092288798449453No Hit
TTAGAATG73120.19779455821508804No Hit
TTAGATTC64650.17488263387042455No Hit
TAAGATTG61260.16571245399694057No Hit
TTACATTG57430.15535204428737018No Hit
TTAGATTT53110.143666151351249No Hit
TTAGATAG50900.13768795149272406No Hit
TTAGCTTG38210.1033606409928681No Hit
TGAGATTG37550.10157529623873846No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)