FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004947911

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947911
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2693608
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNN76410.28367156616701467No Hit
GGGGGGGGGGGGGGGG75690.28099857143281426No Hit
GGACACCTGGCTCCTT74440.2763579555748275No Hit
TCGCGGTGAGTCTTGA64360.2389360292960223No Hit
GTTAAGAGAGTACGTT54260.20143985316348925No Hit
CGCTTACTGATCACAC47810.1774942753362776No Hit
TACCAGTGATACGATC45420.1686214178158069No Hit
ATCTTACTGGTTTGGT44470.16509454976373697No Hit
TTGTGGTGAAAGACAT44170.16398080195782014No Hit
ATTCCTAACTGCGTGC42680.15844918785509993No Hit
ATAGATGGAGAGTAAT42150.15648156673131353No Hit
ATATGCCGAGAACAGC42080.15622169224326626No Hit
TGGAACACTTGAGGCA39260.14575246286764815No Hit
CTTTCTGCTCTTGTGA37480.139144225885875No Hit
GCTATACGACAGGTGA37420.13892147632469162No Hit
CTTGACGCTCAGGGTA36460.1353574833457578No Hit
AGCTCTGCTGGCCTGT34990.12990011909676538No Hit
ACTGGAACTCTGGAAG33200.12325475718812835No Hit
AGGTAGCGATTGACCA32930.1222523841628032No Hit
GCGGTTCGAAGCAAGC32650.12121288621061417No Hit
TGTGACTGACCGTTAA32460.12050751260020016No Hit
AGTTCACGACCAGAGA31850.11824289206150264No Hit
TGTACCCTGCTGAGAG30820.11441902459452157No Hit
ACCCTTTCTAGGTGAC30680.11389927561842703No Hit
TTCCAAACTCCGCTAG30060.1115975301528656No Hit
TCAGTCCACCCAGCAC29900.1110035313230433No Hit
ACACTCCACCGTACAT29300.10877603571120965No Hit
ACATGTGTGTCAATGC29200.1084047864425707No Hit
CACAGCTCTCTCTGGG29070.10792216239334008No Hit
TCCCAGACTCCTAACA28260.10491504331736468No Hit
CAGTGGAGAGATCATC27510.10213067380257261No Hit
GAACTACTGGCCCTGA27020.1003115523862418No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)