FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004947912

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947912
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3158708
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTAATGT309891998.10716913370909No Hit
GGTAATGA141830.4490126975966123No Hit
GGTAAAGT53880.17057607097585467No Hit
GTTAATGT53160.16829665800067622No Hit
GGAAATGT49890.15794432407174072No Hit
GGTATTGT44800.1418301406777708No Hit
GGTAATTT40000.12663405417658105No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)