FastQCFastQC Report
Thu 1 Sep 2022
EGAF00004947916

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947916
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences878467
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCATGCGA85005896.76607089395503No Hit
TCCTGCGA74270.8454500852052497No Hit
TCATGCGC25420.28936772809906347No Hit
TCATGCAA23920.27229252777850504No Hit
TCAAGCGA22490.25601417013957267No Hit
ACATGCGA17790.20251187580182295No Hit
TCATGCCA15760.1794034380346672No Hit
TCATCCGA15620.1778097526714151No Hit
TCATGAGA13360.15208311752177373No Hit
TAATGCGA12920.14707439209440992No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)