FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004947919

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947919
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14333855
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTACCTAC1408228998.2449522476682No Hit
TTACCTAA395850.27616436750615936No Hit
TTACATAC394340.2751109174747477No Hit
TTACCAAC360870.25176060452683524No Hit
ATACCTAC289780.20216473516719682No Hit
TAACCTAC149920.10459154219154582No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)