FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004947925

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947925
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4104261
Sequences flagged as poor quality0
Sequence length8
%GC24

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTAGATTG401484897.82145921031825No Hit
TTAGATTA123280.30037076102128984No Hit
ATAGATTG98150.23914171150421476No Hit
TTAGAATG85260.20773532677380896No Hit
TTAGATTC78210.19055805661482053No Hit
TTACATTG67160.1636348175712997No Hit
TAAGATTG63600.1549609052640658No Hit
TTAGATTT61100.14886967471123305No Hit
TTAGATAG58830.1433388373692609No Hit
TTAGCTTG45540.11095785575040183No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)