FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004947931

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947931
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences901982
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGCCGATGGTTAGAA37030.41054034337714057No Hit
GTCGACCGATGCTCAA32520.36053934557452366No Hit
CATTCAACTAGGCATG32150.3564372681494753No Hit
ACTGGGCACTTCTCGC26360.2922452997953396No Hit
TGTAAGCTGTTGTGAC25760.28559328234931514No Hit
GGGGGGGGGGGGGGGG24860.27561525618027855No Hit
GCTTTAGGAACTAGTC22030.24423990722653002No Hit
TAGTTGCGACATAGCT15280.16940471095875528No Hit
CATCAGTGATTCGCAA14130.15665501085387512No Hit
CAGGAGCCTCGTGCAC12920.14324010900439255No Hit
CAGGAGCCTTCCAATG10980.12173191926224691No Hit
TCCTTAAACAGGGAGG10010.11097782439117411No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)