FastQCFastQC Report
Thu 1 Sep 2022
EGAF00004947933

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947933
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences876666
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGCTTAC86550398.72665302407074No Hit
CAGCTTAA15280.17429671049179504No Hit
CAGCTAAC11670.13311797195283037No Hit
CAGCATAC10770.1228518044500414No Hit
CCGCTTAC9660.11019019786326834No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)