FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004947936

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947936
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4038829
Sequences flagged as poor quality0
Sequence length8
%GC75

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCACCCA382041394.59209587729512No Hit
CCCCCCCA1008192.496243341820117No Hit
CCCACCAA333980.8269228531339159No Hit
CCCACACA154120.3815957546110519No Hit
CCCACCCC119490.29585308018735135No Hit
CCCAACCA112230.27787757293017357No Hit
CCAACCCA95540.23655371396016026No Hit
ACCACCCA85430.21152170592020608No Hit
CACACCCA67960.16826659410438027No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)