FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004947943

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947943
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2705840
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACACCTGGCTCCTT78110.28867190964728145No Hit
GGGGGGGGGGGGGGGG72640.2684563758389262No Hit
TCGCGGTGAGTCTTGA72220.26690417763060637No Hit
NNNNNNNNNNNNNNNN59720.22070780238299384No Hit
GTTAAGAGAGTACGTT51190.189183395914023No Hit
CGCTTACTGATCACAC48290.17846583685657688No Hit
TACCAGTGATACGATC44770.16545693758684918No Hit
ATCTTACTGGTTTGGT42590.15740028974366554No Hit
TTGTGGTGAAAGACAT41640.153889365224847No Hit
ATAGATGGAGAGTAAT41280.15255890961771576No Hit
ATTCCTAACTGCGTGC40280.14886319959790675No Hit
ATATGCCGAGAACAGC38960.14398486237175886No Hit
TGGAACACTTGAGGCA37220.1375543269372912No Hit
CTTTCTGCTCTTGTGA35450.13101292020222924No Hit
CTTGACGCTCAGGGTA35240.13023682109806936No Hit
AGCTCTGCTGGCCTGT34190.12635632557726992No Hit
AGGTAGCGATTGACCA33910.12532152677172337No Hit
GCGGTTCGAAGCAAGC33630.12428672796617687No Hit
GCTATACGACAGGTGA32810.12125624574993348No Hit
TGTGACTGACCGTTAA30980.114493096413683No Hit
ACGCTCTTGCCTCAAA30750.11364308310912692No Hit
ACTGGAACTCTGGAAG30630.11319959790674985No Hit
AGTTCACGACCAGAGA30010.11090825769446826No Hit
TGTACCCTGCTGAGAG29390.10861691748218667No Hit
ACCCTTTCTAGGTGAC29270.10817343227980959No Hit
TTCCAAACTCCGCTAG28500.10532773556455666No Hit
TCAGTCCACCCAGCAC28170.1041081512580197No Hit
ACATGTGTGTCAATGC28090.10381249445643498No Hit
ACACTCCACCGTACAT27520.10170593974514383No Hit
CACAGCTCTCTCTGGG27350.1010776690417763No Hit
TCCCAGACTCCTAACA27280.10081896934038968No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)