FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004947949

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947949
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7206834
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGGAAGA708162098.26256578131257No Hit
CAGGAAGC222500.30873473705652166No Hit
AAGGAAGA146140.20277975044242727No Hit
CAGGAACA119690.16607847495862954No Hit
CAGGAAAA110140.15282716377260805No Hit
CAGCAAGA99770.13843804366799622No Hit
CACGAAGA89880.12471495805231533No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)