FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004947952

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004947952
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2892864
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCGCGGTGAGTCTTGA80070.2767845291033384No Hit
GGGGGGGGGGGGGGGG72610.2509969359084976No Hit
GGACACCTGGCTCCTT68840.23796486803389305No Hit
GTTAAGAGAGTACGTT53540.18507610451096213No Hit
CGCTTACTGATCACAC49080.1696588571049313No Hit
TTGTGGTGAAAGACAT47660.1647502267648946No Hit
ATCTTACTGGTTTGGT47340.16364405654742153No Hit
TACCAGTGATACGATC46330.16015270679852214No Hit
ATTCCTAACTGCGTGC44790.15482926262693303No Hit
ATAGATGGAGAGTAAT44740.15465642353045286No Hit
ATATGCCGAGAACAGC42330.14632557908010885No Hit
TGGAACACTTGAGGCA39180.13543671600185836No Hit
CTTGACGCTCAGGGTA37790.13063178911970974No Hit
CTTTCTGCTCTTGTGA37630.1300787040109732No Hit
GCGGTTCGAAGCAAGC36890.12752068538306674No Hit
AGCTCTGCTGGCCTGT35910.12413303909205549No Hit
TGTGACTGACCGTTAA35300.12202440211499745No Hit
ACTGGAACTCTGGAAG34890.1206071215238601No Hit
AGGTAGCGATTGACCA33380.11538738081015908No Hit
TGTACCCTGCTGAGAG32930.11383182894183758No Hit
AGTTCACGACCAGAGA32620.11276022654366054No Hit
ACGCTCTTGCCTCAAA32460.11220714143492401No Hit
ACCCTTTCTAGGTGAC31690.10954541934912944No Hit
GCTATACGACAGGTGA31300.10819727439658415No Hit
TCAGTCCACCCAGCAC31270.10809357093869605No Hit
TTCCAAACTCCGCTAG31270.10809357093869605No Hit
ACACTCCACCGTACAT30810.10650345125107852No Hit
ACATGTGTGTCAATGC30020.10377259352669188No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)